Affinity Proteomics for Systematic Protein Profiling of


BW25113_RS13030 gene from Escherichia coli BW25113

You can perform a simple search by name, restrict your search to proteins having specific physio-chemial properties and domains,as well as limiting your search to proteins encoded in specified regions of the genome. Protein knowledgebase. UniParc. Sequence archive. Help.

Domain protein search

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A subset of SET domains have been called PR domains. Search results for PH Domain protein at Sigma-Aldrich. Species Human (23035) , Species Mouse (244650) , Species Rat (498949) , Species naked mole-rat (101699656) , Species Domestic Rabbit (100356030) , Species domestic guinea pig (100729093) , Species cow (533130) , Species sheep (101104420) , Species Zebrafish (100101638) , Species Horse (100054529) , Species domestic cat (101080345 2013-02-12 · The Conserved Domains Database (CDD) groups proteins that have strong sequence similarity to protein domain fingerprints and allows you to search these groups with any protein sequence. Such searches are often more sensitive than standard BLAST searches since the scoring matrices used are tuned to locate important functional sites and sequence motifs that are highly conserved within the domain. Search for protein domain sequences, structures, functions,etc. The SYSTERS Protein Family Database in 2005 Partition of the whole protein sequence space by a fully automatic procedure.

Genome-wide comprehensive analysis of human helicases

I have long protein alignment Search CATH. Locate the position of structural domains on your protein sequence.

Domain protein search

Structural Information and Hidden Markov Models for - DiVA

The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function. Pfam 34.0 (March 2021, 19179 entries) The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). A protein domain is a region of the protein's polypeptide chain that is self-stabilizing and that folds independently from the rest. Each domain forms a compact folded three-dimensional structure. Many proteins consist of several domains. One domain may appear in a variety of different proteins.

Protein domains are distinct, compact units of protein structure that form the functional building blocks of proteins. They often combine with other domains in a mosaic manner giving rise to multi-domain proteins with new or modified functions ('Domain shuffling'). SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains.
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Domain protein search

To search for Interpro Databse Matches in proteins from Rice Genome Annotation Project database select the chromosome you wish to view and the Interpro Database/Method Using the Protein Search. TAIR's Protein search allow you to search for proteins with a variety of parameters.

More Proteins are generally composed of one or more functional regions, commonly termed domains . 2018-12-11 · Expert curation of domains in UniProtKB/Swiss-Prot. The majority of domains annotated in UniProtKB/Swiss-Prot are defined by the InterPro resources PROSITE, Pfam and SMART.
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Search results - SMART

Find the domains on a PDB structure. Enter the PDB identifier (e.g. 2abl) for the structure in the Protein DataBank. Go Example. Searching Query Pfam by keyword. Search for keywords in text data in the Pfam database.

Genome-wide comprehensive analysis of human helicases

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